PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481352.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 148aa    MW: 16648.7 Da    PI: 5.2754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08752346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ e    + +a + ++ +   +Wk+Ia  ++  +tl+++k+++  
   XP_016481352.1  7 GWSREQNIVFENALAAYPEDfvdRWKKIAGDVP-VKTLEEIKNHYEL 52
                     6********************************.89*********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.365154IPR017877Myb-like domain
SMARTSM007175.4E-4456IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-10562IPR009057Homeodomain-like
CDDcd001671.54E-5854No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTEAKSGWSR EQNIVFENAL AAYPEDFVDR WKKIAGDVPV KTLEEIKNHY ELLLDDVSRI  60
ESGCVPLPCY NSFSDCSVSH ISDKRTGKKS GISAAINGER NDGGKFTSSD QDRRKGIAWT  120
DDEHKSIIVG LQSLQYNIKL NVCFDIYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-168721175RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481352.11e-108PREDICTED: protein RADIALIS-like 6
TrEMBLA0A0V0I5F03e-57A0A0V0I5F0_SOLCH; Putative transcription factor DIVARICATA-like
STRINGPGSC0003DMT4000651024e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-40MYB family protein